Interactive Visualizations¶
This page showcases interactive 3D multi-omics data from the Brain Cancer Research Lab (BCRL) generated using SMINT.
Patient Cohort — 3D Spatial Transcriptomics¶
Interactive 3D plots comparing spatial transcriptomics across three patients (Patient 1, Patient 5, Patient 3). Use the selector to view one patient at a time or all side by side. Cell type annotations and spatial coordinates are rendered using Plotly, enabling rotation, zoom, and hover-based exploration of tumour microenvironment composition.
Interaction tips
- Select patient: use the buttons at the top of the plot
- Rotate: click and drag within a panel
- Zoom: scroll wheel or pinch
- Pan: right-click and drag
- Toggle cell types: click legend entries to show/hide groups
- Isolate cell type: double-click a legend entry
Data Details¶
| Patient | Modality | Description |
|---|---|---|
| Patient 1 | Spatial Transcriptomics | Primary tumour section, 3D Z-stack alignment |
| Patient 5 | Spatial Transcriptomics | Primary tumour section, 3D Z-stack alignment |
| Patient 3 | Spatial Transcriptomics | Primary tumour section, 3D Z-stack alignment |
Cell type labels follow the glioblastoma tumour microenvironment taxonomy (AC-like, MES-like, OPC-like, NPC-like, and immune populations).